STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR06130.1AraC/XylS family transcriptional regulator; COG2207. (259 aa)    
Predicted Functional Partners:
AJR06968.1
AraC/XylS family transcriptional regulator; COG2207.
  
     0.561
AJR06623.1
Putative amino acid adenylation domain-containing protein; COG1020.
 
   
 0.497
AJR06621.1
Putative amino acid adenylation domain protein; COG1020,COG3320.
 
   
 0.476
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.452
AJR06139.1
Hypothetical protein; COG2207.
 
 
 0.444
AJR06129.1
Hypothetical protein.
       0.432
AJR06372.1
Putative transcriptional regulator, AraC family; COG2207.
  
     0.420
AJR06719.1
Putative transcriptional regulator protein; COG4977.
  
   0.412
Your Current Organism:
Photobacterium gaetbulicola
NCBI taxonomy Id: 658445
Other names: P. gaetbulicola Gung47, Photobacterium gaetbulicola Gung47, Photobacterium sp. Gung47
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.