STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uxaCGlucuronate isomerase; COG1904. (474 aa)    
Predicted Functional Partners:
AJR06155.1
Putative mannonate oxidoreductase; COG0246; Belongs to the mannitol dehydrogenase family.
 
 
 0.981
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
  
 0.974
uxaC-2
Glucuronate isomerase; COG1904.
  
  
 
0.905
AJR05233.1
Putative xylosidase/arabinosidase; COG3507.
 
  
 0.883
AJR06157.1
Carbohydrate kinase; COG0524.
     
 0.794
AJR06158.1
Keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase; COG0800.
 
   
 0.788
kduI
5-keto-4-deoxyuronate isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
  
 0.730
AJR06153.1
Putative small integral C4-dicarboxylate membrane transport protein; COG3090.
 
  
 0.580
AJR06159.1
Hypothetical protein.
 
     0.580
AJR06154.1
TRAP-type C4-dicarboxylate transport system, large permease component; COG1593.
 
    0.555
Your Current Organism:
Photobacterium gaetbulicola
NCBI taxonomy Id: 658445
Other names: P. gaetbulicola Gung47, Photobacterium gaetbulicola Gung47, Photobacterium sp. Gung47
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