STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR06402.1Hypothetical protein; COG4313. (327 aa)    
Predicted Functional Partners:
AJR08805.1
Hypothetical protein.
 
     0.643
AJR05109.1
CDP-4-dehydro-6-deoxy-D-glucose 3-dehydratase; COG5361.
 
     0.641
AJR08810.1
Hypothetical protein; COG5361.
 
     0.633
AJR08806.1
Hypothetical protein; COG5361.
 
     0.632
AJR08768.1
Hypothetical protein; COG5361.
 
     0.627
AJR08799.1
Hypothetical protein.
 
     0.619
AJR06471.1
Phosphatidylserine decarboxylase; COG5361.
 
     0.595
AJR06469.1
Hypothetical protein; COG5361.
 
     0.565
AJR08809.1
Hypothetical protein; COG5361.
 
     0.553
AJR08795.1
Arylsulfatase; COG3119.
 
     0.534
Your Current Organism:
Photobacterium gaetbulicola
NCBI taxonomy Id: 658445
Other names: P. gaetbulicola Gung47, Photobacterium gaetbulicola Gung47, Photobacterium sp. Gung47
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.