STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR06880.1Putative restriction modification system DNA specificity subunit; COG0732. (425 aa)    
Predicted Functional Partners:
AJR06881.1
N-6 adenine-specific DNA methylase; COG0286.
 
 
 0.999
AJR06884.1
Putative N-6 adenine-specific DNA methylase; COG0286.
 
 
 0.997
AJR06877.1
Restriction enzyme; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
  
 0.994
AJR06876.1
Hypothetical protein; COG1451.
 
    0.940
AJR05937.1
ATP-dependent endonuclease; COG3593.
  
  
 0.865
atpF
F0F1 ATP synthase subunit B; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
    
 
 0.804
AJR06879.1
Hypothetical protein.
       0.785
AJR06878.1
Hypothetical protein.
       0.773
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
 
 0.697
AJR06883.1
Integrase catalytic subunit; COG4584.
       0.626
Your Current Organism:
Photobacterium gaetbulicola
NCBI taxonomy Id: 658445
Other names: P. gaetbulicola Gung47, Photobacterium gaetbulicola Gung47, Photobacterium sp. Gung47
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.