STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR07377.1Hypothetical protein. (141 aa)    
Predicted Functional Partners:
AJR07376.1
Hypothetical protein; COG4795.
 
  
 0.985
AJR07375.1
Putative pilin protein; COG2165.
 
   
 0.951
AJR07374.1
Hypothetical protein.
 
   
 0.938
AJR07378.1
Putative MSHA biogenesis protein MshQ.
 
     0.902
AJR07372.1
Putative MSHA pilin protein MshB.
 
   
 0.866
AJR07373.1
Hypothetical protein.
 
   
 0.821
AJR07364.1
MSHA biogenesis protein MshI.
 
   
 0.780
AJR07369.1
Hypothetical protein; COG0457.
 
     0.777
AJR09761.1
Putative type IV pilin; COG4967.
  
  
 0.762
AJR09765.1
Putative fimbrial assembly protein PilE; COG4968.
  
  
 0.761
Your Current Organism:
Photobacterium gaetbulicola
NCBI taxonomy Id: 658445
Other names: P. gaetbulicola Gung47, Photobacterium gaetbulicola Gung47, Photobacterium sp. Gung47
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.