STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR07403.1ABC transporter; COG1463. (158 aa)    
Predicted Functional Partners:
AJR07402.1
Hypothetical protein; COG0767.
 
 0.999
AJR07401.1
Toluene ABC transporter ATP-binding protein; COG1127.
 
 0.998
AJR07404.1
Hypothetical protein; COG2854.
 
 0.996
AJR07405.1
Anti-sigma B factor antagonist; COG3113.
  
 0.973
AJR07343.1
Anti-anti-sigma regulatory factor; COG1366; Belongs to the anti-sigma-factor antagonist family.
  
   0.849
AJR08303.1
Anti-sigma-factor antagonist; COG1366; Belongs to the anti-sigma-factor antagonist family.
  
   0.849
AJR07814.1
Putative chemotaxis LafU protein; COG1360.
 
 
   0.816
AJR09522.1
Hypothetical protein; COG2853.
 
   
 0.814
AJR09673.1
Flagellar motor protein MotB; COG1360.
   
   0.788
AJR07406.1
Putative BolA/YrbA family protein, transcriptional regulator; COG5007; Belongs to the BolA/IbaG family.
     
 0.751
Your Current Organism:
Photobacterium gaetbulicola
NCBI taxonomy Id: 658445
Other names: P. gaetbulicola Gung47, Photobacterium gaetbulicola Gung47, Photobacterium sp. Gung47
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