STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR07423.1Hypothetical protein; COG0792; Belongs to the UPF0102 family. (107 aa)    
Predicted Functional Partners:
gmhA
Putative phosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate.
  
  
 0.829
AJR07421.1
Hemolysin; COG2823.
     
 0.762
lpoA
Lipoprotein; Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1A (PBP1a). Belongs to the LpoA family.
     
 0.752
AJR07179.1
Amidophosphoribosyltransferase-like protein; COG1040.
 
    0.647
AJR07032.1
Putative ComM-related protein; COG0606.
 
  
 0.643
AJR07017.1
Putative Smf protein; COG0758.
 
    0.641
rsmI
Putative methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.560
AJR07339.1
Hypothetical protein; COG0784,COG2208.
  
    0.559
AJR06989.1
Hipothetical sensory box/GGDEF family protein; COG2199,COG2200,COG2202.
  
    0.539
AJR06411.1
Hypothetical protein; COG2199,COG2200.
   
    0.480
Your Current Organism:
Photobacterium gaetbulicola
NCBI taxonomy Id: 658445
Other names: P. gaetbulicola Gung47, Photobacterium gaetbulicola Gung47, Photobacterium sp. Gung47
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.