STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR07445.1Putative leader peptidase PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. (289 aa)    
Predicted Functional Partners:
AJR07446.1
Putative Type IV pilin biogenesis protein; COG1459.
 
  
 0.945
AJR07447.1
Putative type IV pilin assembly protein PilB; COG2804.
 
 
 0.933
coaE
dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
 
  
 0.916
AJR07371.1
Putative MSHA biogenesis protein MshG; COG1459.
 
  
 0.894
AJR06937.1
Putative general secretion pathway protein F; COG1459.
 
  
 0.893
AJR06938.1
Putative general secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.892
AJR07370.1
Putative MSHA biogenesis protein MshE; COG2804.
 
 
 0.891
AJR07017.1
Putative Smf protein; COG0758.
  
  
 0.856
AJR07497.1
Putative twitching motility protein PilT; COG2805.
 
   
 0.848
AJR08150.1
Putative Rec2-like protein; COG0658,COG2333.
 
  
 0.845
Your Current Organism:
Photobacterium gaetbulicola
NCBI taxonomy Id: 658445
Other names: P. gaetbulicola Gung47, Photobacterium gaetbulicola Gung47, Photobacterium sp. Gung47
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