STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR07460.1Putative sugar diacid utilization regulator; COG3835. (378 aa)    
Predicted Functional Partners:
AJR07458.1
Putative glycerate kinase; COG1929; Belongs to the glycerate kinase type-1 family.
 
  
 0.822
AJR07459.1
Putative permease; COG2610.
 
   
 0.790
AJR06532.1
Glycerate kinase GlxK; COG1929; Belongs to the glycerate kinase type-1 family.
 
  
 0.651
AJR07461.1
Hypothetical protein; COG3112; Belongs to the UPF0231 family.
 
     0.647
AJR08381.1
Phosphatase; COG0637.
  
     0.446
AJR07462.1
Putative nitrogen regulatory protein P-II; COG0347; Belongs to the P(II) protein family.
       0.411
Your Current Organism:
Photobacterium gaetbulicola
NCBI taxonomy Id: 658445
Other names: P. gaetbulicola Gung47, Photobacterium gaetbulicola Gung47, Photobacterium sp. Gung47
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.