STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR07871.1Hypothetical protein; COG3457. (393 aa)    
Predicted Functional Partners:
AJR07870.1
Putative mutase; COG1015.
 
  
 0.956
AJR07872.1
Putative transport system permease protein.
 
  
 0.926
AJR07873.1
Hypothetical protein.
 
     0.901
AJR07874.1
Putative hydrolase; COG1735.
 
    0.891
AJR07876.1
Hypothetical protein; COG1725.
 
     0.884
AJR07869.1
Hypothetical protein; COG3325,COG3979.
       0.598
AJR07875.1
Hypothetical protein.
       0.534
AJR08437.1
Putative phosphosugar isomerase; COG2222.
  
     0.437
AJR06306.1
Putative PTS IIA-like nitrogen-regulatory protein PtsN; COG1762,COG3711.
  
     0.427
AJR06304.1
Ascorbate-specific PTS system enzyme IIC; COG3037.
  
     0.423
Your Current Organism:
Photobacterium gaetbulicola
NCBI taxonomy Id: 658445
Other names: P. gaetbulicola Gung47, Photobacterium gaetbulicola Gung47, Photobacterium sp. Gung47
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.