Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AJR06964.1 | AJR08118.1 | H744_2c0211 | H744_2c1440 | Hypothetical protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily. | Glutaredoxin 1; COG0695. | 0.752 |
AJR06964.1 | AJR09263.1 | H744_2c0211 | H744_2c2607 | Hypothetical protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily. | Hypothetical protein; COG2431. | 0.549 |
AJR06964.1 | queF | H744_2c0211 | H744_2c0911 | Hypothetical protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily. | 7-cyano-7-deazaguanine reductase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1). | 0.805 |
AJR07228.1 | AJR08118.1 | H744_2c0492 | H744_2c1440 | Hypothetical protein; COG0607. | Glutaredoxin 1; COG0695. | 0.641 |
AJR07228.1 | AJR10026.1 | H744_2c0492 | H744_2c3395 | Hypothetical protein; COG0607. | Phage shock protein E; COG0607. | 0.511 |
AJR07228.1 | secB | H744_2c0492 | H744_2c0493 | Hypothetical protein; COG0607. | Preprotein translocase subunit SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA. | 0.593 |
AJR08118.1 | AJR06964.1 | H744_2c1440 | H744_2c0211 | Glutaredoxin 1; COG0695. | Hypothetical protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily. | 0.752 |
AJR08118.1 | AJR07228.1 | H744_2c1440 | H744_2c0492 | Glutaredoxin 1; COG0695. | Hypothetical protein; COG0607. | 0.641 |
AJR08118.1 | AJR08473.1 | H744_2c1440 | H744_2c1807 | Glutaredoxin 1; COG0695. | Hypothetical protein; COG0209. | 0.637 |
AJR08118.1 | AJR08474.1 | H744_2c1440 | H744_2c1808 | Glutaredoxin 1; COG0695. | Hypothetical protein; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | 0.886 |
AJR08118.1 | AJR09263.1 | H744_2c1440 | H744_2c2607 | Glutaredoxin 1; COG0695. | Hypothetical protein; COG2431. | 0.541 |
AJR08118.1 | AJR09347.1 | H744_2c1440 | H744_2c2691 | Glutaredoxin 1; COG0695. | Ribonucleotide-diphosphate reductase subunit alpha; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. | 0.886 |
AJR08118.1 | AJR10026.1 | H744_2c1440 | H744_2c3395 | Glutaredoxin 1; COG0695. | Phage shock protein E; COG0607. | 0.641 |
AJR08118.1 | nfuA | H744_2c1440 | H744_2c0442 | Glutaredoxin 1; COG0695. | Putative DNA uptake protein; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins. | 0.625 |
AJR08118.1 | queF | H744_2c1440 | H744_2c0911 | Glutaredoxin 1; COG0695. | 7-cyano-7-deazaguanine reductase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1). | 0.569 |
AJR08118.1 | secB | H744_2c1440 | H744_2c0493 | Glutaredoxin 1; COG0695. | Preprotein translocase subunit SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA. | 0.902 |
AJR08473.1 | AJR08118.1 | H744_2c1807 | H744_2c1440 | Hypothetical protein; COG0209. | Glutaredoxin 1; COG0695. | 0.637 |
AJR08473.1 | AJR08474.1 | H744_2c1807 | H744_2c1808 | Hypothetical protein; COG0209. | Hypothetical protein; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | 0.994 |
AJR08474.1 | AJR08118.1 | H744_2c1808 | H744_2c1440 | Hypothetical protein; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | Glutaredoxin 1; COG0695. | 0.886 |
AJR08474.1 | AJR08473.1 | H744_2c1808 | H744_2c1807 | Hypothetical protein; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | Hypothetical protein; COG0209. | 0.994 |
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