STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR08150.1Putative Rec2-like protein; COG0658,COG2333. (816 aa)    
Predicted Functional Partners:
AJR07179.1
Amidophosphoribosyltransferase-like protein; COG1040.
 
  
 0.896
AJR07017.1
Putative Smf protein; COG0758.
 
  
 0.892
AJR07445.1
Putative leader peptidase PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.845
AJR07339.1
Hypothetical protein; COG0784,COG2208.
  
    0.819
AJR07446.1
Putative Type IV pilin biogenesis protein; COG1459.
 
  
 0.773
AJR06937.1
Putative general secretion pathway protein F; COG1459.
  
  
 0.736
AJR07371.1
Putative MSHA biogenesis protein MshG; COG1459.
  
  
 0.736
AJR07447.1
Putative type IV pilin assembly protein PilB; COG2804.
 
  
 0.694
lpxK
Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
     
 0.676
AJR08302.1
Putative response regulator; COG0784,COG2208.
  
  
 0.669
Your Current Organism:
Photobacterium gaetbulicola
NCBI taxonomy Id: 658445
Other names: P. gaetbulicola Gung47, Photobacterium gaetbulicola Gung47, Photobacterium sp. Gung47
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.