STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AJR08336.1Heme NO binding, putative. (180 aa)    
Predicted Functional Partners:
AJR08266.1
Hypothetical protein; COG1032.
  
  
 0.876
AJR09202.1
Putative radical SAM domain protein; COG1032.
  
  
 0.876
AJR08337.1
Putative hybrid two component sensor histidine kinase; COG0642,COG0784,COG2198.
     
 0.800
AJR09741.1
Hypothetical protein; COG2326.
   
    0.613
AJR08335.1
Putative cytochrome c; COG2863.
       0.505
idi
Isopentenyldiphosphate isomerase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).
  
    0.493
AJR09605.1
Glucose-specific PTS system component; COG2190.
      
 0.471
AJR05859.1
Putative electron transfer flavoprotein,beta subunit; COG2086.
  
    0.469
AJR06401.1
Hypothetical protein.
  
     0.461
AJR06663.1
Hypothetical protein.
  
     0.452
Your Current Organism:
Photobacterium gaetbulicola
NCBI taxonomy Id: 658445
Other names: P. gaetbulicola Gung47, Photobacterium gaetbulicola Gung47, Photobacterium sp. Gung47
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