STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR08437.1Putative phosphosugar isomerase; COG2222. (385 aa)    
Predicted Functional Partners:
AJR08439.1
Putative permease protein; COG3715.
 
  
 0.966
AJR08436.1
Putative tagatose 6-phosphate kinase; COG4573.
 
  
 0.958
AJR08438.1
Putative PTS transport protein, component 2; COG3444.
 
  
 0.954
AJR08440.1
Putative PTS permease protein; COG3716.
 
  
 0.944
AJR08441.1
Putative PTS permease protein; COG2893,COG3444.
 
  
 0.880
AJR08442.1
Putative N-acetylglucosamine-6-phosphatedeacetylase; COG1820.
 
 
 0.831
AJR08435.1
DeoR family transcriptional regulator; COG1349.
 
  
 0.770
AJR07915.1
N-acetylglucosamine-6-phosphate deacetylase; COG1820.
  
 
 0.694
AJR05769.1
N-acetylglucosamine-6-phosphate deacetylase; COG1820.
  
 
 0.692
AJR08453.1
Hypothetical protein.
   
    0.667
Your Current Organism:
Photobacterium gaetbulicola
NCBI taxonomy Id: 658445
Other names: P. gaetbulicola Gung47, Photobacterium gaetbulicola Gung47, Photobacterium sp. Gung47
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.