STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR08458.1Hypothetical protein; COG4289. (497 aa)    
Predicted Functional Partners:
AJR08455.1
Hypothetical protein; Broad-specificity glycosaminoglycan lyase.
 
     0.848
AJR08454.1
Hypothetical protein; COG4625.
 
    0.842
AJR08457.1
Putative sulfatase; COG3119.
 
     0.826
AJR08445.1
Hypothetical protein; COG4225.
 
     0.790
AJR08451.1
Putative chondroitin ABC endolyase 1 precursor.
 
     0.782
AJR08428.1
Hypothetical protein; Broad-specificity glycosaminoglycan lyase.
 
     0.781
AJR08427.1
Hypothetical protein.
 
     0.778
AJR08439.1
Putative permease protein; COG3715.
  
    0.686
AJR08426.1
Hypothetical protein; COG4625.
 
    0.654
AJR08440.1
Putative PTS permease protein; COG3716.
 
    0.634
Your Current Organism:
Photobacterium gaetbulicola
NCBI taxonomy Id: 658445
Other names: P. gaetbulicola Gung47, Photobacterium gaetbulicola Gung47, Photobacterium sp. Gung47
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