STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR08500.1Citrate carrier protein; COG3493. (427 aa)    
Predicted Functional Partners:
AJR08499.1
Signal transduction histidine kinase regulating citrate/malate metabolism; COG3290.
 
  
 0.788
AJR08498.1
Response regulator receiver; COG4565.
 
    0.677
AJR07254.1
Putative malate oxidoreductase; COG0280,COG0281.
 
  
 0.633
maeA
Malate dehydrogenase; COG0281.
 
  
 0.600
AJR06278.1
Malate dehydrogenase; COG0281.
  
  
 0.542
AJR09399.1
Putative sensor kinase citA; COG3290.
 
  
 0.526
AJR05461.1
Signal transduction histidine kinase regulating citrate/malate metabolism; COG3290.
 
  
 0.468
AJR05460.1
Response regulator receiver/unknown domain-containing protein; COG4565.
 
    0.427
AJR08464.1
Hypothetical protein.
  
     0.419
Your Current Organism:
Photobacterium gaetbulicola
NCBI taxonomy Id: 658445
Other names: P. gaetbulicola Gung47, Photobacterium gaetbulicola Gung47, Photobacterium sp. Gung47
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