STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR08568.1Putative ScrA; COG0520. (471 aa)    
Predicted Functional Partners:
AJR09723.1
Scaffold protein; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.
  
 
 0.974
AJR07612.1
Hypothetical protein; COG2166.
 
 
 0.914
AJR08569.1
Putative ScrB; COG0834.
 
     0.762
AJR06621.1
Putative amino acid adenylation domain protein; COG1020,COG3320.
  
  
 0.723
AJR06623.1
Putative amino acid adenylation domain-containing protein; COG1020.
  
  
 0.723
AJR06244.1
Amino acid ABC transporter; COG0765,COG0834.
  
     0.694
AJR06071.1
Thermolabile hemolysin precursor (TL)-(Lecithin-dependent hemolysin) (LDH); COG3240.
  
     0.691
AJR08824.1
Putative lipase activator protein.
  
     0.672
AJR05909.1
Hypothetical protein; COG0457.
 
   0.664
AJR09705.1
Metal-dependent hydrolase.
 
     0.650
Your Current Organism:
Photobacterium gaetbulicola
NCBI taxonomy Id: 658445
Other names: P. gaetbulicola Gung47, Photobacterium gaetbulicola Gung47, Photobacterium sp. Gung47
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.