STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR08569.1Putative ScrB; COG0834. (312 aa)    
Predicted Functional Partners:
AJR08570.1
Hypothetical protein; COG2199,COG2200,COG3300.
       0.808
AJR08568.1
Putative ScrA; COG0520.
 
     0.762
AJR05555.1
PTR2 family transport protein; COG3104.
  
     0.568
AJR06071.1
Thermolabile hemolysin precursor (TL)-(Lecithin-dependent hemolysin) (LDH); COG3240.
  
     0.547
AJR08824.1
Putative lipase activator protein.
  
     0.537
AJR06244.1
Amino acid ABC transporter; COG0765,COG0834.
  
     0.524
AJR08222.1
Hypothetical protein; COG4720.
  
     0.507
AJR09705.1
Metal-dependent hydrolase.
  
     0.500
AJR05424.1
Hypothetical protein; COG1917.
  
     0.458
AJR05909.1
Hypothetical protein; COG0457.
  
 
   0.441
Your Current Organism:
Photobacterium gaetbulicola
NCBI taxonomy Id: 658445
Other names: P. gaetbulicola Gung47, Photobacterium gaetbulicola Gung47, Photobacterium sp. Gung47
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.