STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AJR08589.1Y4bN protein. (494 aa)    
Predicted Functional Partners:
AJR08588.1
AAA ATPase central domain protein; COG1222.
 
  
 0.817
AJR06972.1
Putative signal peptide protein; COG5572.
  
    0.475
AJR05441.1
ATPase, E1-E2 type; COG0474.
   
 
 0.438
AJR07930.1
ATPase, E1-E2 type; COG0474.
   
 
 0.438
AJR09685.1
Putative pyrimidine deaminase/pyrimidine reductase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
  
  
 0.424
AJR08507.1
Putative serine/threonine protein kinase; COG2114,COG3899.
  
 
 0.408
Your Current Organism:
Photobacterium gaetbulicola
NCBI taxonomy Id: 658445
Other names: P. gaetbulicola Gung47, Photobacterium gaetbulicola Gung47, Photobacterium sp. Gung47
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.