STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR08808.1ISVch4 transposase, OrfA; COG2963. (103 aa)    
Predicted Functional Partners:
AJR08807.1
Transposase IS3/IS911 family protein; COG2801.
 
    0.898
AJR05484.1
Putative transposase IS3/IS911 family protein; COG2801.
 
  
 0.793
AJR05483.1
ISVch4 transposase, OrfB; COG2801.
 
    0.740
AJR08239.1
Transposase IS3/IS911 family protein; COG2801.
 
    0.734
AJR06774.1
Transposase IS3/IS911 family protein; COG2801.
 
    0.712
AJR08806.1
Hypothetical protein; COG5361.
       0.634
AJR08809.1
Hypothetical protein; COG5361.
       0.580
AJR06215.1
Integrase; COG2801.
 
    0.474
AJR06626.1
Putative McyG protein; COG1020,COG3321.
  
 
 0.436
AJR08810.1
Hypothetical protein; COG5361.
       0.433
Your Current Organism:
Photobacterium gaetbulicola
NCBI taxonomy Id: 658445
Other names: P. gaetbulicola Gung47, Photobacterium gaetbulicola Gung47, Photobacterium sp. Gung47
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.