STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR08861.1Putative oxidoreductase ygjR; COG0673. (326 aa)    
Predicted Functional Partners:
AJR05494.1
Putative DegT/DnrJ/EryC1/StrS aminotransferase; COG0399; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.661
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
 
 
 0.658
lysS
lysyl-tRNA synthetase; COG1190; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.633
AJR05054.1
Acetolactate synthase IolD; COG3962; Belongs to the TPP enzyme family.
  
  
 0.631
AJR05642.1
Acetolactate synthase IolD; COG3962; Belongs to the TPP enzyme family.
  
  
 0.631
AJR05666.1
Putative acetolactate synthase; COG3962; Belongs to the TPP enzyme family.
  
  
 0.631
AJR05057.1
Hypothetical protein; COG3718.
  
  
 0.622
AJR05645.1
Hypothetical protein; COG3718.
  
  
 0.622
AJR05657.1
Hypothetical protein; COG3718.
  
  
 0.622
AJR05648.1
Hypothetical protein; COG1082,COG3185.
  
  
 0.538
Your Current Organism:
Photobacterium gaetbulicola
NCBI taxonomy Id: 658445
Other names: P. gaetbulicola Gung47, Photobacterium gaetbulicola Gung47, Photobacterium sp. Gung47
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.