STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR08863.1Putative GGDEF domain-containing protein; COG2199. (432 aa)    
Predicted Functional Partners:
AJR08357.1
Hypothetical protein; COG2199,COG2200,COG3300.
 
  
 0.813
AJR08925.1
Hypothetical protein; COG2197,COG2200.
    0.806
AJR08920.1
Hypothetical protein; COG4943.
    0.805
AJR05526.1
Putative cellobiose-specific phosphotransferase system enzyme IIC; COG2199,COG2200.
 
  
 0.803
AJR06697.1
Hypothetical protein; COG2199,COG2200.
 
    0.791
AJR07363.1
Regulatory protein CsrD; COG2199,COG2200.
 
  
 0.783
AJR07339.1
Hypothetical protein; COG0784,COG2208.
 
 
 0.780
AJR06436.1
Hypothetical protein; COG4943.
 
     0.771
AJR06411.1
Hypothetical protein; COG2199,COG2200.
 
    0.727
AJR07543.1
Hybrid sensory histidine kinase BarA; COG0642,COG0784.
  
 0.668
Your Current Organism:
Photobacterium gaetbulicola
NCBI taxonomy Id: 658445
Other names: P. gaetbulicola Gung47, Photobacterium gaetbulicola Gung47, Photobacterium sp. Gung47
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