STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR08900.1Hypothetical protein; COG1566; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (302 aa)    
Predicted Functional Partners:
AJR08898.1
Hypothetical protein; COG0628.
 
     0.845
AJR08901.1
Putative outer membrane protein; COG1538.
 
 
 0.819
AJR08902.1
Hypothetical protein; COG4592.
 
  
 0.803
AJR06395.1
Hypothetical protein; COG1289.
 
  
 0.792
AJR08899.1
Kef-type K+ transport system NAD-binding component; COG1226.
 
   
 0.779
AJR06739.1
Multidrug resistance protein B; COG0477; Belongs to the major facilitator superfamily.
  
 
 0.751
AJR05431.1
Outer membrane efflux protein; COG1538.
 
 
 0.716
AJR06412.1
Putative toxin secretion ATP-binding protein; COG2274.
  
 
 0.679
AJR05239.1
Putative outer membrane efflux protein (OprM-family protein); COG1538.
 
 
 0.675
AJR06382.1
Putative multidrug resistance efflux pump; COG1566.
  
     0.671
Your Current Organism:
Photobacterium gaetbulicola
NCBI taxonomy Id: 658445
Other names: P. gaetbulicola Gung47, Photobacterium gaetbulicola Gung47, Photobacterium sp. Gung47
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