STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR08905.1Hypothetical protein; COG0577. (821 aa)    
Predicted Functional Partners:
AJR08906.1
Putative ABC transporter, ATP-binding protein; COG4181.
 
 
 0.955
AJR08904.1
Hydrolase; COG5621.
     0.954
lolA
Outer-membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
   
 
 0.792
AJR09234.1
Putative ABC transporter, ATP-binding protein; COG0577,COG1136.
  
 
 0.741
lolD
Putative ABC transporter ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner.
  
 
 0.738
AJR10034.1
Putative ABC transporter; COG4181.
  
 
 0.738
AJR08903.1
Hydrolase; COG1473.
       0.661
AJR08907.1
Nucleoside-diphosphate-sugar epimerase; COG0702.
       0.500
AJR05683.1
Hypothetical protein.
   
 
 0.487
AJR06546.1
Hypothetical protein.
   
 
 0.487
Your Current Organism:
Photobacterium gaetbulicola
NCBI taxonomy Id: 658445
Other names: P. gaetbulicola Gung47, Photobacterium gaetbulicola Gung47, Photobacterium sp. Gung47
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.