STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR09048.1Putative lipopolysaccharide biosynthesis; COG0489,COG3206. (514 aa)    
Predicted Functional Partners:
AJR09049.1
Polysaccharide biosynthesis/export protein; COG1596.
 
 
 0.980
AJR09050.1
Putative sugar transferase domain-containing protein; COG2148.
 
  
 0.980
AJR09047.1
Putative exopolysaccharide biosynthesis protein; COG0489,COG3206.
 
  
 0.957
AJR09045.1
Putative general secretion pathway protein A; COG3267.
 
     0.945
AJR09053.1
Putative glycosyl transferase group 1; COG0438.
 
  
 0.904
AJR09052.1
Hypothetical protein.
 
     0.900
AJR09051.1
Polysaccharide deacetylase; COG0726.
 
     0.899
AJR09054.1
Putative eight transmembrane protein EpsH; COG0817.
 
     0.884
AJR09056.1
Glycosyl transferase, group 1; COG0438.
 
  
 0.856
AJR09058.1
Putative glycosyl transferase, group 1; COG0438.
 
  
 0.841
Your Current Organism:
Photobacterium gaetbulicola
NCBI taxonomy Id: 658445
Other names: P. gaetbulicola Gung47, Photobacterium gaetbulicola Gung47, Photobacterium sp. Gung47
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.