STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR09070.1Hypothetical protein; COG1960. (370 aa)    
Predicted Functional Partners:
AJR09071.1
Hypothetical protein; COG0457.
 
     0.717
AJR09069.1
Hypothetical protein; COG0394; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
       0.687
AJR09056.1
Glycosyl transferase, group 1; COG0438.
 
     0.571
AJR09057.1
Putative glycosyl transferase, group 1; COG0438.
 
     0.557
AJR09048.1
Putative lipopolysaccharide biosynthesis; COG0489,COG3206.
 
     0.548
AJR05957.1
Hypothetical protein.
  
     0.503
AJR09049.1
Polysaccharide biosynthesis/export protein; COG1596.
 
     0.486
AJR05495.1
Hypothetical protein; COG2120.
  
  
 0.457
AJR09051.1
Polysaccharide deacetylase; COG0726.
 
   
 0.452
AJR09047.1
Putative exopolysaccharide biosynthesis protein; COG0489,COG3206.
 
   
 0.446
Your Current Organism:
Photobacterium gaetbulicola
NCBI taxonomy Id: 658445
Other names: P. gaetbulicola Gung47, Photobacterium gaetbulicola Gung47, Photobacterium sp. Gung47
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.