STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR09178.1Diaminopropionate ammonia-lyase; COG1171. (400 aa)    
Predicted Functional Partners:
AJR09177.1
Peptidase; COG0624.
  
 0.902
AJR09179.1
Aspartate/ornithine carbamoyltransferase family protein; COG0078; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.
 
    0.853
AJR09150.1
Putative selenate reductase subunit YgfK; COG0493,COG1146,COG1249.
 
  
 0.805
AJR09176.1
Phenylhydantoinase; COG0044.
 
    0.779
ilvD
Dihydroxy-acid dehydratase; COG0129; Belongs to the IlvD/Edd family.
  
  
 0.763
AJR09980.1
Acetolactate synthase III small subunit; COG0440.
  
  
 0.763
AJR07257.1
Bifunctional aspartate kinase II/homoserine dehydrogenase II; COG0460,COG0527; In the C-terminal section; belongs to the homoserine dehydrogenase family.
  
 
 0.760
AJR09883.1
Bifunctional aspartokinase I/homoserine dehydrogenase I; COG0460,COG0527; In the C-terminal section; belongs to the homoserine dehydrogenase family.
  
 
 0.760
edd
Phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family.
  
  
 0.745
AJR09153.1
Putative protein yqeB; COG0508,COG1975.
 
    0.731
Your Current Organism:
Photobacterium gaetbulicola
NCBI taxonomy Id: 658445
Other names: P. gaetbulicola Gung47, Photobacterium gaetbulicola Gung47, Photobacterium sp. Gung47
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