STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR09363.1Short chain dehydrogenase; COG1028. (253 aa)    
Predicted Functional Partners:
AJR06621.1
Putative amino acid adenylation domain protein; COG1020,COG3320.
  
 
 0.756
AJR06623.1
Putative amino acid adenylation domain-containing protein; COG1020.
  
 
 0.756
AJR05687.1
Hypothetical protein; COG0331.
  
 
 0.711
AJR06548.1
Putative short chain dehydrogenase/reductase family oxidoreductase; COG1028.
  
     0.592
AJR09362.1
Putative periplasmic protease; COG0616.
       0.587
AJR08891.1
Putative 1-phosphofructokinase; COG1105; Belongs to the carbohydrate kinase PfkB family.
   
    0.572
AJR06622.1
Putative amino acid adenylation domain protein; COG1020,COG3320; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 
 0.555
AJR06627.1
Hypothetical protein; COG3321.
  
 
 0.546
fadB
Multifunctional fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family.
 
 0.537
sbcD
Exonuclease SbcD; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
    
 
 0.523
Your Current Organism:
Photobacterium gaetbulicola
NCBI taxonomy Id: 658445
Other names: P. gaetbulicola Gung47, Photobacterium gaetbulicola Gung47, Photobacterium sp. Gung47
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