STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR09399.1Putative sensor kinase citA; COG3290. (524 aa)    
Predicted Functional Partners:
AJR09400.1
Putative transcriptional regulator CitB; COG4565.
 
 0.997
AJR05460.1
Response regulator receiver/unknown domain-containing protein; COG4565.
 
 
 0.888
AJR08498.1
Response regulator receiver; COG4565.
 
 
 0.882
AJR05462.1
Putative tricarboxylic transport TctC; COG3181.
 
    0.588
AJR07585.1
Cell autolysis regulator LytS; COG3275.
  
   
 0.575
AJR05464.1
Integral membrane protein; COG3333.
 
     0.564
AJR08500.1
Citrate carrier protein; COG3493.
 
  
 0.526
AJR07584.1
Putative two-component response-regulatory protein YehT; COG3279.
 
   
 0.516
AJR09256.1
Putative response regulator; COG3437.
  
 
 0.504
AJR05105.1
Hypothetical protein; COG3333.
 
     0.465
Your Current Organism:
Photobacterium gaetbulicola
NCBI taxonomy Id: 658445
Other names: P. gaetbulicola Gung47, Photobacterium gaetbulicola Gung47, Photobacterium sp. Gung47
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.