STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR09516.1Hypothetical protein; COG1887. (385 aa)    
Predicted Functional Partners:
AJR09518.1
Putative glycerol-3-phosphate cytidyltransferase; COG0615.
 
  
 0.786
AJR09050.1
Putative sugar transferase domain-containing protein; COG2148.
  
  
 0.640
glgB
Glycogen branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.560
AJR09221.1
Hypothetical protein.
   
 0.560
AJR05258.1
Hypothetical protein; COG1073.
   
 
 0.537
AJR09644.1
Fermentation/respiration switch protein; COG1073; Belongs to the UPF0255 family.
   
 
 0.537
AJR09454.1
Nucleotide sugar dehydrogenase; COG1004.
  
  
 0.527
AJR09521.1
Putative CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; COG1887.
 
  
0.485
AJR09519.1
Teichoic acid biosynthesis protein F; COG1887.
 
  
0.478
AJR06621.1
Putative amino acid adenylation domain protein; COG1020,COG3320.
  
 
 0.476
Your Current Organism:
Photobacterium gaetbulicola
NCBI taxonomy Id: 658445
Other names: P. gaetbulicola Gung47, Photobacterium gaetbulicola Gung47, Photobacterium sp. Gung47
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.