STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR09875.1Hypothetical protein; COG3945. (178 aa)    
Predicted Functional Partners:
AJR06495.1
Hypothetical protein; COG2841.
  
     0.687
AJR06283.1
Hypothetical protein; COG2841.
  
     0.677
ung
uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.
       0.560
AJR09622.1
Hypothetical protein; COG4519.
  
     0.503
AJR07628.1
Hypothetical protein.
  
     0.495
AJR07359.1
Hypothetical protein; COG3307.
  
     0.476
AJR06481.1
MscS mechanosensitive ion channel; COG3264.
  
     0.469
AJR08849.1
Hypothetical protein; COG4519.
  
     0.466
AJR09401.1
Hypothetical protein; COG3264.
  
     0.460
AJR08912.1
Putative ATP-dependent helicase; COG1061.
  
     0.453
Your Current Organism:
Photobacterium gaetbulicola
NCBI taxonomy Id: 658445
Other names: P. gaetbulicola Gung47, Photobacterium gaetbulicola Gung47, Photobacterium sp. Gung47
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.