STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR09891.1Putative Fe-S oxidoreductase; COG1242. (312 aa)    
Predicted Functional Partners:
AJR09890.1
Sensory box/GGDEF family protein; COG3706.
       0.585
AJR09814.1
Putative lipid carrier protein; COG3154.
 
     0.509
AJR05955.1
Putative DNA gyrase inhibitor; COG3449.
   
    0.491
AJR09888.1
Hypothetical protein.
       0.433
AJR09889.1
Aerobic respiration control sensor protein ArcB; COG0642,COG0784,COG2198.
       0.433
AJR09816.1
Putative protease; COG0826.
 
    0.426
AJR09817.1
Putative protease; COG0826.
 
    0.420
Your Current Organism:
Photobacterium gaetbulicola
NCBI taxonomy Id: 658445
Other names: P. gaetbulicola Gung47, Photobacterium gaetbulicola Gung47, Photobacterium sp. Gung47
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.