STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR09979.1Putative LuxZ; COG1802. (218 aa)    
Predicted Functional Partners:
AJR07027.1
GntR-famly transcriptional regulator; COG2186.
 
  
 0.710
AJR05077.1
Hypothetical protein; COG2186.
 
  
 0.645
AJR06658.1
Putative transcriptional regulator; COG2186.
 
  
 0.627
AJR07450.1
Transcriptional regulator PdhR; COG2186.
 
  
 0.600
AJR09980.1
Acetolactate synthase III small subunit; COG0440.
   
    0.597
AJR06151.1
Transcriptional regulator; COG2186.
 
  
 0.544
prmB
N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Specifically methylates the 50S ribosomal protein L3 on a specific glutamine residue; Belongs to the protein N5-glutamine methyltransferase family. PrmB subfamily.
   
   0.537
AJR09978.1
Pyruvate kinase; COG0469,COG3848; Belongs to the pyruvate kinase family.
       0.491
AJR06138.1
Hypothetical protein; COG0579.
 
  
 0.447
AJR08580.1
Drug/metabolite exporter family protein; COG2510.
  
     0.416
Your Current Organism:
Photobacterium gaetbulicola
NCBI taxonomy Id: 658445
Other names: P. gaetbulicola Gung47, Photobacterium gaetbulicola Gung47, Photobacterium sp. Gung47
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.