STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR10000.1D-lactate dehydrogenase; COG1052; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (317 aa)    
Predicted Functional Partners:
AJR06532.1
Glycerate kinase GlxK; COG1929; Belongs to the glycerate kinase type-1 family.
 
  
 0.927
AJR07458.1
Putative glycerate kinase; COG1929; Belongs to the glycerate kinase type-1 family.
 
  
 0.927
AJR09737.1
Malate synthase; COG2225; Belongs to the malate synthase family.
  
 
 0.924
AJR07358.1
Putative Serine-pyruvate aminotransferase/ aspartate aminotransferase; COG0075.
  
 
 0.919
AJR09736.1
Isocitrate lyase; COG2224.
     
 0.918
AJR06534.1
Putative hydroxypyruvate isomerase; COG3622; Belongs to the hyi family.
   
 
 0.907
AJR06158.1
Keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase; COG0800.
    
  0.903
AJR06535.1
Glyoxylate carboligase; COG3960; Belongs to the TPP enzyme family.
    
 0.903
AJR06573.1
Khg/kdpg aldolase; COG0800.
    
  0.903
AJR06651.1
Keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase; COG0800.
    
  0.903
Your Current Organism:
Photobacterium gaetbulicola
NCBI taxonomy Id: 658445
Other names: P. gaetbulicola Gung47, Photobacterium gaetbulicola Gung47, Photobacterium sp. Gung47
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.