STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mdhMalate dehydrogenase, NAD-dependent; Catalyzes the reversible oxidation of malate to oxaloacetate. (312 aa)    
Predicted Functional Partners:
AJR08128.1
Putative fumarate hydratase, class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
  
 
 0.993
AJR05466.1
Citrate synthase; COG0372.
  
 0.985
AJR07931.1
Type II citrate synthase; COG0372; Belongs to the citrate synthase family.
  
 0.985
fumC
Fumarate hydratase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
  
 0.974
AJR08099.1
Isocitrate dehydrogenase; COG0538.
  
 
 0.951
AJR09169.1
Pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; COG0674,COG1013,COG1014.
  
  
 0.950
AJR08047.1
Pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; COG0674,COG1013,COG1014.
  
  
 0.945
AJR06278.1
Malate dehydrogenase; COG0281.
  
 0.939
AJR07254.1
Putative malate oxidoreductase; COG0280,COG0281.
  
 0.939
AJR07568.1
Oxaloacetate decarboxylase; COG1038,COG5016.
    
 0.939
Your Current Organism:
Photobacterium gaetbulicola
NCBI taxonomy Id: 658445
Other names: P. gaetbulicola Gung47, Photobacterium gaetbulicola Gung47, Photobacterium sp. Gung47
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