STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO69689.1Dipeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily. (318 aa)    
Predicted Functional Partners:
SFO69680.1
Dipeptide transport system permease protein.
 
 0.999
SFO69667.1
Dipeptide transport system permease protein.
 
 0.997
SFO69698.1
Dipeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 
0.992
SFO69661.1
Dipeptide transport system substrate-binding protein.
 
 
 0.966
SFO69649.1
Dipeptide transport system substrate-binding protein.
 
 
 0.963
SFP25610.1
Peptide/nickel transport system substrate-binding protein.
 
 
 0.949
SFO88154.1
Microcin C transport system permease protein.
  
 0.910
SFO88171.1
Microcin C transport system permease protein.
 
  
 0.890
ftsE
Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
 
    
0.828
SFO88207.1
Microcin C transport system substrate-binding protein.
 
 
 0.826
Your Current Organism:
Pseudomonas composti
NCBI taxonomy Id: 658457
Other names: CCUG 59231, CECT 7516, P. composti, Pseudomonas composti Gibello et al. 2011, Pseudomonas sp. C2(2009), Pseudomonas sp. CECT C2-B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.