STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO73580.1Hypothetical protein. (146 aa)    
Predicted Functional Partners:
SFO73542.1
Predicted 3-hydroxylacyl-ACP dehydratase, HotDog domain.
 
     0.861
SFO73478.1
Predicted exporter.
 
     0.858
SFO73463.1
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
 
     0.844
SFO73548.1
3-oxoacyl-[acyl-carrier protein] reductase.
 
     0.838
SFO73381.1
Acyl carrier protein.
 
     0.829
SFO73498.1
Dehydrogenase (flavoprotein).
 
     0.828
SFO73390.1
Uncharacterized membrane protein.
 
     0.826
SFO73353.1
Beta-ketoacyl synthase, N-terminal domain.
 
     0.825
SFO73361.1
1-acyl-sn-glycerol-3-phosphate acyltransferases.
 
     0.824
SFO73400.1
Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase.
 
     0.824
Your Current Organism:
Pseudomonas composti
NCBI taxonomy Id: 658457
Other names: CCUG 59231, CECT 7516, P. composti, Pseudomonas composti Gibello et al. 2011, Pseudomonas sp. C2(2009), Pseudomonas sp. CECT C2-B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.