STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO80777.1Ammonium transporter. (402 aa)    
Predicted Functional Partners:
SFP59394.1
Nitrogen regulatory protein P-II family; Belongs to the P(II) protein family.
 0.999
SFP30641.1
PAS/PAC sensor signal transduction histidine kinase.
  
 
 0.779
SFO73798.1
Glutamate synthase (NADPH) large subunit.
 
  
 0.778
SFP10029.1
Polar amino acid transport system substrate-binding protein.
   
 0.746
SFP02766.1
PAS domain S-box-containing protein.
  
 0.731
SFP43104.1
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase.
 
 
 0.693
SFP43091.1
PAS domain S-box-containing protein.
 
 0.680
SFP57020.1
Two-component system, NarL family, sensor histidine kinase BarA.
  
 0.680
SFP11190.1
Signal transduction histidine kinase.
  
 0.647
SFP00384.1
Na+/proline symporter.
  
 0.593
Your Current Organism:
Pseudomonas composti
NCBI taxonomy Id: 658457
Other names: CCUG 59231, CECT 7516, P. composti, Pseudomonas composti Gibello et al. 2011, Pseudomonas sp. C2(2009), Pseudomonas sp. CECT C2-B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.