STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO81193.1Hypothetical protein; Belongs to the UPF0270 family. (83 aa)    
Predicted Functional Partners:
SFP53078.1
Hypothetical protein.
  
     0.738
SFO89896.1
Protein of unknown function.
  
     0.736
SFO81203.1
Signal transduction histidine kinase.
       0.642
SFP59486.1
Hypothetical protein.
  
     0.635
SFP50715.1
Hypothetical protein.
  
     0.633
SFP06208.1
SMI1-KNR4 cell-wall.
  
     0.561
SFO93506.1
Fatty acid cis/trans isomerase (CTI).
  
     0.552
SFO97379.1
Hypothetical protein.
  
     0.552
SFO69475.1
TIGR02099 family protein.
  
     0.526
SFO81831.1
Beta-barrel assembly machine subunit BamC.
  
     0.523
Your Current Organism:
Pseudomonas composti
NCBI taxonomy Id: 658457
Other names: CCUG 59231, CECT 7516, P. composti, Pseudomonas composti Gibello et al. 2011, Pseudomonas sp. C2(2009), Pseudomonas sp. CECT C2-B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.