STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO89896.1Protein of unknown function. (271 aa)    
Predicted Functional Partners:
tolB
TolB protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 0.892
SFO80207.1
Periplasmic chaperone for outer membrane proteins Skp.
 
 
 0.870
SFO80792.1
Protein of unknown function.
 
 
 0.818
SFP53078.1
Hypothetical protein.
  
     0.772
SFO79926.1
Hypothetical protein.
  
     0.762
SFP59486.1
Hypothetical protein.
  
     0.754
SFO81831.1
Beta-barrel assembly machine subunit BamC.
  
  
 0.753
SFO69475.1
TIGR02099 family protein.
  
     0.752
SFP50715.1
Hypothetical protein.
  
     0.744
SFO72876.1
GlcNAc-PI de-N-acetylase.
  
     0.742
Your Current Organism:
Pseudomonas composti
NCBI taxonomy Id: 658457
Other names: CCUG 59231, CECT 7516, P. composti, Pseudomonas composti Gibello et al. 2011, Pseudomonas sp. C2(2009), Pseudomonas sp. CECT C2-B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.