STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO91128.1tRNA 2-thiouridine synthesizing protein E; Part of a sulfur-relay system. (111 aa)    
Predicted Functional Partners:
SFO91139.1
tRNA 2-thiouridine synthesizing protein B.
 
 0.996
SFO91168.1
tRNA 2-thiouridine synthesizing protein D.
 
 
 0.992
SFO91160.1
tRNA 2-thiouridine synthesizing protein C; Belongs to the DsrF/TusC family.
 
 
 0.991
SFO91110.1
Anthranilate phosphoribosyltransferase.
  
    0.900
mnmA
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
   
 0.868
SFO82339.1
Indolepyruvate ferredoxin oxidoreductase.
    
 0.753
SFO74279.1
Fe-S oxidoreductase.
 
 
 0.709
SFO70877.1
FAD/FMN-containing dehydrogenase.
 
 
 0.626
SFO91094.1
Putative glutathione S-transferase.
       0.606
SFO91189.1
Modulator of FtsH protease; Belongs to the BI1 family.
     
 0.600
Your Current Organism:
Pseudomonas composti
NCBI taxonomy Id: 658457
Other names: CCUG 59231, CECT 7516, P. composti, Pseudomonas composti Gibello et al. 2011, Pseudomonas sp. C2(2009), Pseudomonas sp. CECT C2-B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.