STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO99582.1Hypothetical protein. (79 aa)    
Predicted Functional Partners:
SFO99571.1
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain.
       0.585
SFO99597.1
AAA domain (dynein-related subfamily).
       0.526
SFO99620.1
PLD-like domain-containing protein.
       0.514
SFO99556.1
Hypothetical protein.
       0.472
SFO99602.1
Rhomboid family protein.
       0.464
SFO99633.1
AAA domain-containing protein.
       0.436
SFO99542.1
Phage shock protein A (PspA) family protein.
       0.407
Your Current Organism:
Pseudomonas composti
NCBI taxonomy Id: 658457
Other names: CCUG 59231, CECT 7516, P. composti, Pseudomonas composti Gibello et al. 2011, Pseudomonas sp. C2(2009), Pseudomonas sp. CECT C2-B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.