STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP11333.1Two-component response regulator AlgB. (450 aa)    
Predicted Functional Partners:
SFP11311.1
Two-component system, NtrC family, sensor histidine kinase KinB.
 
 0.979
SFP43104.1
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase.
  
 0.953
SFP30641.1
PAS/PAC sensor signal transduction histidine kinase.
 0.884
SFP43091.1
PAS domain S-box-containing protein.
  
 0.880
SFO69359.1
RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.862
SFO83486.1
Flagellar biosynthesis protein FlhG.
  
 0.858
SFP68251.1
Chemotaxis protein CheY-P-specific phosphatase CheC.
  
 
 0.844
SFP11190.1
Signal transduction histidine kinase.
  
0.842
SFP10029.1
Polar amino acid transport system substrate-binding protein.
  
 0.839
SFO74890.1
Chemosensory pili system protein ChpA (sensor histidine kinase/response regulator).
  
 0.836
Your Current Organism:
Pseudomonas composti
NCBI taxonomy Id: 658457
Other names: CCUG 59231, CECT 7516, P. composti, Pseudomonas composti Gibello et al. 2011, Pseudomonas sp. C2(2009), Pseudomonas sp. CECT C2-B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.