STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP19914.1Putative spermidine/putrescine transport system substrate-binding protein. (352 aa)    
Predicted Functional Partners:
SFP19902.1
Type I phosphodiesterase / nucleotide pyrophosphatase.
 
    0.984
SFP19877.1
Putative spermidine/putrescine transport system permease protein.
 
  0.983
SFP19892.1
Putative spermidine/putrescine transport system permease protein.
 
 
 0.965
SFP60751.1
iron(III) transport system permease protein.
  
 
 0.961
SFP19861.1
Putative spermidine/putrescine transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.933
SFP59824.1
Sensory transduction protein kinase AlgZ.
   
   0.915
SFP60059.1
High-affinity iron transporter.
  
 
 0.804
SFP19923.1
Transcriptional regulator, GntR family.
 
   
 0.753
SFP43091.1
PAS domain S-box-containing protein.
    
 0.743
SFO72518.1
Chemotaxis protein MotB.
    
   0.688
Your Current Organism:
Pseudomonas composti
NCBI taxonomy Id: 658457
Other names: CCUG 59231, CECT 7516, P. composti, Pseudomonas composti Gibello et al. 2011, Pseudomonas sp. C2(2009), Pseudomonas sp. CECT C2-B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.