Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFO71509.1 | SFO73798.1 | SAMN05216601_101339 | SAMN05216601_101560 | Urea carboxylase. | Glutamate synthase (NADPH) large subunit. | 0.823 |
SFO71509.1 | SFO82339.1 | SAMN05216601_101339 | SAMN05216601_102352 | Urea carboxylase. | Indolepyruvate ferredoxin oxidoreductase. | 0.782 |
SFO71509.1 | SFO99481.1 | SAMN05216601_101339 | SAMN05216601_104151 | Urea carboxylase. | Homoserine dehydrogenase. | 0.566 |
SFO71509.1 | SFP02187.1 | SAMN05216601_101339 | SAMN05216601_104341 | Urea carboxylase. | Fumarase, class I, homodimeric; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. | 0.846 |
SFO71509.1 | SFP16286.1 | SAMN05216601_101339 | SAMN05216601_10660 | Urea carboxylase. | L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family. | 0.819 |
SFO71509.1 | SFP24890.1 | SAMN05216601_101339 | SAMN05216601_107171 | Urea carboxylase. | Gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. | 0.807 |
SFO71509.1 | SFP43143.1 | SAMN05216601_101339 | SAMN05216601_11198 | Urea carboxylase. | Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. | 0.794 |
SFO71509.1 | SFP63323.1 | SAMN05216601_101339 | SAMN05216601_11787 | Urea carboxylase. | 4-hydroxyphenylpyruvate dioxygenase. | 0.716 |
SFO73798.1 | SFO71509.1 | SAMN05216601_101560 | SAMN05216601_101339 | Glutamate synthase (NADPH) large subunit. | Urea carboxylase. | 0.823 |
SFO73798.1 | SFO82339.1 | SAMN05216601_101560 | SAMN05216601_102352 | Glutamate synthase (NADPH) large subunit. | Indolepyruvate ferredoxin oxidoreductase. | 0.843 |
SFO73798.1 | SFO93522.1 | SAMN05216601_101560 | SAMN05216601_103413 | Glutamate synthase (NADPH) large subunit. | Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | 0.552 |
SFO73798.1 | SFO99481.1 | SAMN05216601_101560 | SAMN05216601_104151 | Glutamate synthase (NADPH) large subunit. | Homoserine dehydrogenase. | 0.853 |
SFO73798.1 | SFP16286.1 | SAMN05216601_101560 | SAMN05216601_10660 | Glutamate synthase (NADPH) large subunit. | L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family. | 0.805 |
SFO73798.1 | SFP24890.1 | SAMN05216601_101560 | SAMN05216601_107171 | Glutamate synthase (NADPH) large subunit. | Gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. | 0.778 |
SFO82339.1 | SFO71509.1 | SAMN05216601_102352 | SAMN05216601_101339 | Indolepyruvate ferredoxin oxidoreductase. | Urea carboxylase. | 0.782 |
SFO82339.1 | SFO73798.1 | SAMN05216601_102352 | SAMN05216601_101560 | Indolepyruvate ferredoxin oxidoreductase. | Glutamate synthase (NADPH) large subunit. | 0.843 |
SFO82339.1 | SFO93522.1 | SAMN05216601_102352 | SAMN05216601_103413 | Indolepyruvate ferredoxin oxidoreductase. | Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | 0.769 |
SFO82339.1 | SFO99481.1 | SAMN05216601_102352 | SAMN05216601_104151 | Indolepyruvate ferredoxin oxidoreductase. | Homoserine dehydrogenase. | 0.765 |
SFO82339.1 | SFP02187.1 | SAMN05216601_102352 | SAMN05216601_104341 | Indolepyruvate ferredoxin oxidoreductase. | Fumarase, class I, homodimeric; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. | 0.693 |
SFO82339.1 | SFP16286.1 | SAMN05216601_102352 | SAMN05216601_10660 | Indolepyruvate ferredoxin oxidoreductase. | L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family. | 0.589 |
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