Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFO68362.1 | SFP18496.1 | SAMN05216601_10144 | SAMN05216601_106194 | 23S rRNA pseudouridine1911/1915/1917 synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | Ribosomal large subunit pseudouridine synthase A. | 0.571 |
SFO68362.1 | SFP39591.1 | SAMN05216601_10144 | SAMN05216601_110193 | 23S rRNA pseudouridine1911/1915/1917 synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | 16S rRNA pseudouridine516 synthase; Belongs to the pseudouridine synthase RsuA family. | 0.594 |
SFO68362.1 | cmk | SAMN05216601_10144 | SAMN05216601_10955 | 23S rRNA pseudouridine1911/1915/1917 synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | Cytidylate kinase. | 0.415 |
SFO68362.1 | der | SAMN05216601_10144 | SAMN05216601_104109 | 23S rRNA pseudouridine1911/1915/1917 synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.625 |
SFO68362.1 | rlmL | SAMN05216601_10144 | SAMN05216601_102219 | 23S rRNA pseudouridine1911/1915/1917 synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | 23S rRNA m(2)G-2445 methyltransferase; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family. | 0.710 |
SFO90265.1 | SFP25765.1 | SAMN05216601_103206 | SAMN05216601_107224 | Exodeoxyribonuclease-3. | Exodeoxyribonuclease-3. | 0.698 |
SFO90265.1 | SFP39591.1 | SAMN05216601_103206 | SAMN05216601_110193 | Exodeoxyribonuclease-3. | 16S rRNA pseudouridine516 synthase; Belongs to the pseudouridine synthase RsuA family. | 0.734 |
SFO90265.1 | rlmL | SAMN05216601_103206 | SAMN05216601_102219 | Exodeoxyribonuclease-3. | 23S rRNA m(2)G-2445 methyltransferase; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family. | 0.575 |
SFP18496.1 | SFO68362.1 | SAMN05216601_106194 | SAMN05216601_10144 | Ribosomal large subunit pseudouridine synthase A. | 23S rRNA pseudouridine1911/1915/1917 synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | 0.571 |
SFP18496.1 | SFP39591.1 | SAMN05216601_106194 | SAMN05216601_110193 | Ribosomal large subunit pseudouridine synthase A. | 16S rRNA pseudouridine516 synthase; Belongs to the pseudouridine synthase RsuA family. | 0.609 |
SFP18496.1 | rlmL | SAMN05216601_106194 | SAMN05216601_102219 | Ribosomal large subunit pseudouridine synthase A. | 23S rRNA m(2)G-2445 methyltransferase; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family. | 0.710 |
SFP25765.1 | SFO90265.1 | SAMN05216601_107224 | SAMN05216601_103206 | Exodeoxyribonuclease-3. | Exodeoxyribonuclease-3. | 0.698 |
SFP25765.1 | SFP39591.1 | SAMN05216601_107224 | SAMN05216601_110193 | Exodeoxyribonuclease-3. | 16S rRNA pseudouridine516 synthase; Belongs to the pseudouridine synthase RsuA family. | 0.734 |
SFP25765.1 | rlmL | SAMN05216601_107224 | SAMN05216601_102219 | Exodeoxyribonuclease-3. | 23S rRNA m(2)G-2445 methyltransferase; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family. | 0.575 |
SFP32718.1 | SFP39591.1 | SAMN05216601_10939 | SAMN05216601_110193 | Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves. | 16S rRNA pseudouridine516 synthase; Belongs to the pseudouridine synthase RsuA family. | 0.657 |
SFP32718.1 | cmk | SAMN05216601_10939 | SAMN05216601_10955 | Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves. | Cytidylate kinase. | 0.926 |
SFP32718.1 | der | SAMN05216601_10939 | SAMN05216601_104109 | Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves. | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.729 |
SFP39562.1 | SFP39573.1 | SAMN05216601_110191 | SAMN05216601_110192 | Diguanylate cyclase (GGDEF) domain-containing protein. | Cysteine-rich CWC. | 0.805 |
SFP39562.1 | SFP39591.1 | SAMN05216601_110191 | SAMN05216601_110193 | Diguanylate cyclase (GGDEF) domain-containing protein. | 16S rRNA pseudouridine516 synthase; Belongs to the pseudouridine synthase RsuA family. | 0.807 |
SFP39573.1 | SFP39562.1 | SAMN05216601_110192 | SAMN05216601_110191 | Cysteine-rich CWC. | Diguanylate cyclase (GGDEF) domain-containing protein. | 0.805 |
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