STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP64853.1Serine/threonine-protein kinase HipA. (421 aa)    
Predicted Functional Partners:
SFP01173.1
Transcriptional regulator, XRE family with cupin sensor.
 
 
 0.844
SFP35312.1
Transcriptional regulator, XRE family with cupin sensor.
  
 
 0.838
SFP59085.1
Transcriptional regulator, XRE family with cupin sensor.
  
 
 0.829
SFO92524.1
Helix-turn-helix.
  
 
 0.816
SFO93233.1
Helix-turn-helix domain-containing protein.
  
 
 0.816
SFP09222.1
Helix-turn-helix domain-containing protein.
  
 
 0.816
SFP10454.1
Cro/C1-type HTH DNA-binding domain-containing protein.
  
 
 0.816
SFP25352.1
Transcriptional regulator, contains XRE-family HTH domain.
  
 
 0.816
SFP68278.1
Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein.
  
 
 0.816
SFP17663.1
Hypothetical protein.
  
 
 0.805
Your Current Organism:
Pseudomonas composti
NCBI taxonomy Id: 658457
Other names: CCUG 59231, CECT 7516, P. composti, Pseudomonas composti Gibello et al. 2011, Pseudomonas sp. C2(2009), Pseudomonas sp. CECT C2-B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.