STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP71918.1Ribosomal protein S18 acetylase RimI. (149 aa)    
Predicted Functional Partners:
SFO71509.1
Urea carboxylase.
   
  0.710
argA
N-acetylglutamate synthase.
    
 0.708
SFP59085.1
Transcriptional regulator, XRE family with cupin sensor.
  
 
 0.642
SFP35312.1
Transcriptional regulator, XRE family with cupin sensor.
    
 0.635
SFP68251.1
Chemotaxis protein CheY-P-specific phosphatase CheC.
    
   0.625
SFO99990.1
tRNA threonylcarbamoyladenosine biosynthesis protein TsaB.
  
 0.614
SFP71932.1
Transposase and inactivated derivatives, IS30 family.
       0.613
SFP02389.1
Leucine dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
  
  0.538
SFO82355.1
Leucine dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
  
  0.528
SFO81241.1
Asparagine synthase (glutamine-hydrolysing).
 
 
 0.507
Your Current Organism:
Pseudomonas composti
NCBI taxonomy Id: 658457
Other names: CCUG 59231, CECT 7516, P. composti, Pseudomonas composti Gibello et al. 2011, Pseudomonas sp. C2(2009), Pseudomonas sp. CECT C2-B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.