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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGC75859.1Hypothetical protein. (165 aa)    
Predicted Functional Partners:
EGC75860.1
Hypothetical protein.
     0.990
EGC75861.1
Hypothetical protein.
    
  0.646
EGC75703.1
Hypothetical protein.
 
  
  0.579
EGC75862.1
Hypothetical protein.
       0.572
EGC75156.1
Riboflavin biosynthesis protein RibF; Belongs to the ribF family.
   
 0.494
EGC73542.1
Hypothetical protein.
 
   
 0.483
EGC75395.1
Hypothetical protein.
    
 0.441
EGC75858.1
Hypothetical protein.
     
 0.436
EGC74598.1
Hypothetical protein.
 
  
 0.428
cmk
Cytidylate kinase.
       0.417
Your Current Organism:
Lachnospiraceae bacterium 6137FAA
NCBI taxonomy Id: 658656
Other names: L. bacterium 6_1_37FAA, Lachnospiraceae bacterium 6_1_37FAA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.