rpmB protein (Lachnospiraceae bacterium 6137FAA)

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second shell of interactors

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Predicted Interactions

gene neighborhood

gene fusions

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Score

rpmB

50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. (61 aa)

Predicted Functional Partners:

rpsP

0.998

rplS

0.998

rpmF

0.998

rplU

0.998

rpsO

0.998

rpsT

0.998

rpmG

0.998

rpsF

0.998

rplM

0.998

rpmE

0.997

Your Current Organism:

Lachnospiraceae bacterium 6137FAA

NCBI taxonomy Id: 658656
Other names: L. bacterium 6_1_37FAA, Lachnospiraceae bacterium 6_1_37FAA

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplM	rplS	HMPREF0490_02763	HMPREF0490_00468	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.999
rplM	rplU	HMPREF0490_02763	HMPREF0490_01009	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.998
rplM	rpmB	HMPREF0490_02763	HMPREF0490_00530	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.998
rplM	rpmE	HMPREF0490_02763	HMPREF0490_00103	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L31; Binds the 23S rRNA.	0.997
rplM	rpmF	HMPREF0490_02763	HMPREF0490_00616	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.997
rplM	rpmG	HMPREF0490_02763	HMPREF0490_01974	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	0.998
rplM	rpsF	HMPREF0490_02763	HMPREF0490_02205	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.998
rplM	rpsO	HMPREF0490_02763	HMPREF0490_01045	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.998
rplM	rpsP	HMPREF0490_02763	HMPREF0490_00463	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.998
rplM	rpsT	HMPREF0490_02763	HMPREF0490_01059	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.998
rplS	rplM	HMPREF0490_00468	HMPREF0490_02763	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.999
rplS	rplU	HMPREF0490_00468	HMPREF0490_01009	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.998
rplS	rpmB	HMPREF0490_00468	HMPREF0490_00530	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.998
rplS	rpmE	HMPREF0490_00468	HMPREF0490_00103	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	50S ribosomal protein L31; Binds the 23S rRNA.	0.998
rplS	rpmF	HMPREF0490_00468	HMPREF0490_00616	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.998
rplS	rpmG	HMPREF0490_00468	HMPREF0490_01974	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	0.995
rplS	rpsF	HMPREF0490_00468	HMPREF0490_02205	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.998
rplS	rpsO	HMPREF0490_00468	HMPREF0490_01045	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.998
rplS	rpsP	HMPREF0490_00468	HMPREF0490_00463	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.999
rplS	rpsT	HMPREF0490_00468	HMPREF0490_01059	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.993